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Douglas H. Turner
Biophysical Chemistry of RNA Folding and Therapeutics
Professor of Chemistry
Ph.D. 1972, Columbia University

The research in Professor Turner's group focuses on the forces directing nucleic acid chemistry, with particular emphasis on RNA folding. This chemistry is important for life and for design of therapeutics. Nevertheless, much of it is not well understood. Studies of the properties of short oligonucleotides provide insight into the interactions determining the sequence dependence of the structures, energetics, and dynamics of nucleic acids.

Insight into the structures of large RNAs are provided by experiments that detect: (1) binding to oligonucleotides in a microarray and (2) chemical reactivity of individual nucleotides. All this information is incorporated into computer programs to predict the secondary and three-dimensional structure of an RNA. The results from these studies are providing the foundation for a bioinformatics approach to develop deeper interpretations of the many nucleic acid sequences determined by the Human Genome Project and other sequencing efforts.

The solutions to these challenging problems require many different clues. The group therefore applies the methods of UV and NMR spectroscopies, thermodynamics, oligonucleotide synthesis, chemical and microarray mapping of RNA structure, and rapid reaction kinetics. By combining the results obtained from these various techniques, it is often possible to deduce unifying concepts for the nucleic acid chemistry.

The goal of the Turner group is to predict RNA secondary and 3D structure from sequence.
Relevant Publications
Chen, G., Turner, D. H.  "Consecutive GA Pairs Stabilize Medium-Size RNA Internal Loops,"  Biochemistry  2006454025-4043.
Kierzek, E., Kierzek, R., Turner, D. H., Catrina, I. E.  "Facilitating RNA Structure Prediction with Microarrays,"  Biochemistry  200645581-593.
Yildirim, I., Turner, D. H.  "RNA Challenges for Computational Chemists,"  Biochemistry  20054413225-13234.
Chen, G., Znosko, B. M., Kennedy, S. D., Krugh, T. R., Turner, D. H.  "Solution Structure of an RNA Internal Loop with Three Consecutive Sheared GA Pairs,"  Biochemistry  2005442845-2856.
Mathews, D. H., Disney, M. D., Childs, J. L., Schroeder, S. J., Zuker, M., Turner, D. H.  "Incorporating Chemical Modification Constraints into a Dynamic Programming Algorithm for Prediction of RNA Secondary Structure,"  Proc. Natl. Acad. Sci. U.S.A.  20041017287-7292.
Childs, J. L., Poole, A. W., Turner, D. H.  "Inhibition of Escherichia coli RNase P by Oligonucleotide Directed Misfolding of RNA,"  RNA  200391437-1445.
Turner, D. H.  "Conformational Changes,"  chapter 8 in Nucleic Acids: Structures, Properties and Functions, ed. by V.A. Bloomfield, D.M. Crothers, and I. Tinoco, Jr., University Science Press, 2000.

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